In my opinion this particular error is probably unrelated to the previous problems. If you look at the schematic you'll notice that those parameters are not controlled via the D and P lines on CN06; instead the are multiplexed and passed via CN11. Could indeed be a 4051 or one of its lines acting up.
Message
[PolySix] Re: Polysix restoration: LEDs, Sub-Osc LFO issues.
2012-11-10 by Malte Rogacki