Homebrew PCBs

I need some help getting to the next level in this whole 
complex PCB design. I designed a PCB using the Egale software,
the sch. and board, but I got hung up on getting it from there to
my CNC. When I coverted the board to a dxf and then to a gcode the 
file was huge, and did not appear to be close to routing a actual 
board. It sound like a lot of you are using print a silk screen 
process, but I have a small CNC I would like to use.
So I would like to get it to the route/ drill stage, 
even if it is just a test board to see how the whole process works.
Any help will help, I have read alot of info and totorials but did not
find alot of help on this.
Thanks, Mark